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Examples Gene: MT-ND1, POLG, Region: M:1-1000 Variant: m.8993T>G, 1:g.10042757T>C rs3888511 MSCV_0000006, ClinVar: RCV000000015, Disease: Leigh syndrome, Phenotype: Retinopathy

MSeqDR Central Portal

MSeqDR Data Summary for the Term PLAT:

Ensembl Gene ID	Associated Gene Name	LSDB Genes	LSDB Variants	clinVar hits	Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID	Description	Chr	Gene Start	Gene End	Strand	Band	Transcript Start bp	Transcript End bp	Associated Gene Name	Associated Transcript Name	Associated Gene DB	Associated Transcript DB	Transcript count	pct GC content	Gene Biotype	Transcript Biotype	Source Gene	Source Transcript	Status gene	Status transcript	EntrezGene ID	HGNC ID	HGNC Symbol	RefSeq mRNA	Seq region id
ENSG00000104368	PLAT	0	0	0	ENSG00000104368	ENST00000429089	ENSP00000392045	plasminogen activator, tissue [Source:HGNC Symbol;Acc:9051]	8	42032236	42065242	-1	p11.21	42032751	42065083	PLAT	PLAT-003	HGNC Symbol	HGNC transcript name	13	48.7	protein_coding	protein_coding	ensembl_hava	havana	KNOWN	KNOWN	5327	9051	PLAT		27523

MSeqDR Master Exome Data Set M1: 328 entries from same gene

No.	Chr	Position	Reference	Variant	EnsemblTranscriptID	EnsemblGeneID	Gene_Start	Gene_End	EnsemblProteinID	Gene	strand	Uniprot	cChange	pChange	Nature	dbSNP	Freq	EVS	phastCons	SIFT	Polyphen	HGMD	type	samples
1	8	42032826	A	T	ENST00000220809	ENSG00000104368	42032236	42065242	ENSP00000220809	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs139760382	0.0042	-	-	-	-	-	het	2
2	8	42032826	A	T	ENST00000270189	ENSG00000104368	42032236	42065242	ENSP00000270189	PLAT	-1	-	-	-	3'_UTR	rs139760382	0.0042	-	-	-	-	-	het	2
3	8	42032826	A	T	ENST00000352041	ENSG00000104368	42032236	42065242	ENSP00000270188	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs139760382	0.0042	-	-	-	-	-	het	2
4	8	42032826	A	T	ENST00000429089	ENSG00000104368	42032236	42065242	ENSP00000392045	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs139760382	0.0042	-	-	-	-	-	het	2
5	8	42032966	A	G	ENST00000220809	ENSG00000104368	42032236	42065242	ENSP00000220809	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs8178808	0.0688	-	-	-	-	-	het	2
6	8	42032966	A	G	ENST00000270189	ENSG00000104368	42032236	42065242	ENSP00000270189	PLAT	-1	-	-	-	3'_UTR	rs8178808	0.0688	-	-	-	-	-	het	2
7	8	42032966	A	G	ENST00000352041	ENSG00000104368	42032236	42065242	ENSP00000270188	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs8178808	0.0688	-	-	-	-	-	het	2
8	8	42032966	A	G	ENST00000429089	ENSG00000104368	42032236	42065242	ENSP00000392045	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs8178808	0.0688	-	-	-	-	-	het	2
9	8	42033024	G	C	ENST00000220809	ENSG00000104368	42032236	42065242	ENSP00000220809	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
10	8	42033024	G	C	ENST00000270189	ENSG00000104368	42032236	42065242	ENSP00000270189	PLAT	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
11	8	42033024	G	C	ENST00000352041	ENSG00000104368	42032236	42065242	ENSP00000270188	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
12	8	42033024	G	C	ENST00000429089	ENSG00000104368	42032236	42065242	ENSP00000392045	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	1
13	8	42033029	A	G	ENST00000220809	ENSG00000104368	42032236	42065242	ENSP00000220809	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs8178807	0.0234	-	-	-	-	-	het	2
14	8	42033029	A	G	ENST00000270189	ENSG00000104368	42032236	42065242	ENSP00000270189	PLAT	-1	-	-	-	3'_UTR	rs8178807	0.0234	-	-	-	-	-	het	2
15	8	42033029	A	G	ENST00000352041	ENSG00000104368	42032236	42065242	ENSP00000270188	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs8178807	0.0234	-	-	-	-	-	het	2
16	8	42033029	A	G	ENST00000429089	ENSG00000104368	42032236	42065242	ENSP00000392045	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	rs8178807	0.0234	-	-	-	-	-	het	2
17	8	42033072	C	T	ENST00000220809	ENSG00000104368	42032236	42065242	ENSP00000220809	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
18	8	42033072	C	T	ENST00000270189	ENSG00000104368	42032236	42065242	ENSP00000270189	PLAT	-1	-	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
19	8	42033072	C	T	ENST00000352041	ENSG00000104368	42032236	42065242	ENSP00000270188	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2
20	8	42033072	C	T	ENST00000429089	ENSG00000104368	42032236	42065242	ENSP00000392045	PLAT	-1	TPA_HUMAN	-	-	3'_UTR	NA	-	-	-	-	-	-	het	2

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Select a dataset from the above drop-down list,
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Transcripts and variants in the surrounding PLAT 8:42032236..42065242 region Gbrowse